PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919438
Common NameARALYDRAFT_919438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 245aa    MW: 27129.3 Da    PI: 6.0867
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919438genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-2085134255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  919438  85 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 134
             7********.**********93....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-3384143IPR001471AP2/ERF domain
SMARTSM003801.4E-3785148IPR001471AP2/ERF domain
PROSITE profilePS5103224.80385142IPR001471AP2/ERF domain
CDDcd000183.06E-3385143No hitNo description
SuperFamilySSF541714.25E-2285143IPR016177DNA-binding domain
PfamPF008474.2E-1485134IPR001471AP2/ERF domain
PRINTSPR003671.2E-118697IPR001471AP2/ERF domain
PRINTSPR003671.2E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MYGKGPFGGD ESEEKEEDEN LFPVFSARSQ HDMRVMVSAL TQVIGSNSHD NMSSIDNYPS  60
VYNPQDPNQQ VAPTHQDQGN LRRRHYRGVR QRPWGKWAAE IRDPQKAARV WLGTFETAES  120
AALAYDEAAL KFKGSKAKLN FPERVQLGSN STYYVSNQIP QIEPQNIPNY NQYYQDGSSN  180
DMLSFNLGGG YGSGSGYSMS HDHSTTTAAT ASSSSGGSSR QHEDQDYARF WRFGDSSSSP  240
HSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2784148469ATERF1
3gcc_A1e-2784148469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608620.0AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313570.0BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866459.10.0hypothetical protein ARALYDRAFT_919438
SwissprotQ9FH541e-138EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLD7MKN80.0D7MKN8_ARALL; Putative uncharacterized protein
STRINGscaffold_802838.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-124ERF family protein